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Fix IO warning#296

Merged
Zethson merged 10 commits into
mainfrom
fix/warning
Jul 22, 2025
Merged

Fix IO warning#296
Zethson merged 10 commits into
mainfrom
fix/warning

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@Zethson

@Zethson Zethson commented Mar 25, 2025

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Fixes

/home/lukas/miniforge3/envs/lamindb/lib/python3.12/site-packages/anndata/utils.py:429: FutureWarning: Importing read_text from `anndata` is deprecated. Import anndata.io.read_text instead.
  warnings.warn(msg, FutureWarning)

also modernizes the setup a tiny but and removes ancient flake8 and other stuff

Zethson and others added 8 commits March 25, 2025 12:32
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson

Zethson commented Mar 25, 2025

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IDK what to do about

Error: no downloadable artifacts found (expired)

@Zethson Zethson requested a review from LucaMarconato March 25, 2025 12:07
@Zethson

Zethson commented May 9, 2025

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@LucaMarconato interested in merging this?

The RTD error is unrelated and it'll likely work with a rerun.

@Zethson

Zethson commented Jul 22, 2025

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It's been 3 months and several requested reviews. I've checked the PR again and it should not change behavior. Therefore, I'll merge it now and am ready to take any blame if I broke something.

@Zethson Zethson merged commit 4ee33da into main Jul 22, 2025
3 of 4 checks passed
@LucaMarconato LucaMarconato deleted the fix/warning branch November 10, 2025 01:01
@LucaMarconato

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Thanks!

IDK what to do about
Error: no downloadable artifacts found (expired)

To fix one had to re-run this https://github.com/scverse/spatialdata-io/actions/workflows/prepare_test_data.yaml

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2 participants